Scaffold Ga0208793_1022452

Overview

Basic Information

• Taxon OID: 3300025108
• Scaffold ID: Ga0208793_1022452
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2199
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022555	Metagenome	214	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208793_10224523	F063682	GGAGG	VNPGDLVRIRKTSIDHMSANWFIWHAEKMTPLVLIEELNKSYWNVLKPDGSTVHIHKSHLTKRMY
Ga0208793_10224527	F022555	AGGAG	MAIAPKFKPGQLVRYSQGLHDLVGLVKSTQFARRRGEPVFVLVQWCGKYRQSEEYIPQKDLKLVVGS