Scaffold Ga0208793_1021883

Overview

Basic Information

• Taxon OID: 3300025108
• Scaffold ID: Ga0208793_1021883
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2238
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011671	Metagenome / Metatranscriptome	288	Y
F070009	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208793_10218835	F070009	N/A	MKHIGFPLPTEMFHPHQCFALPKDEAMCELLQINLRCYSCGKLIKRPVKEKKEINPPIKRYWMK
Ga0208793_10218836	F011671	AGGA	MKEEKLLQVANLSPSEDWIEKIVEIHPMRQVVIMSLVQVGVFGFMFFSFFLIDLFV