Scaffold Ga0208013_1079236

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208013_1079236

Scaffold Ga0208013_1079236

Overview

Basic Information
Taxon OID	3300025103 Open in IMG/M
Scaffold ID	Ga0208013_1079236 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	851
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	45
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001039	Metagenome / Metatranscriptome	795	Y
F002005	Metagenome / Metatranscriptome	605	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208013_10792361	F002005	N/A	YITYFAKKHKKIITRTASAEKPNGVVGKILTDKNGIDRFIHWDFDAWNKKTKELGDWRQATRQWAIKEIA
Ga0208013_10792362	F001039	AGGAG	MEINYNIVLYIGIALIIGGFILFLIAQHFERQADIRLFKLQQLAKSFDKAKEKERIK

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