Scaffold Ga0208013_1048912

Overview

Basic Information

• Taxon OID: 3300025103
• Scaffold ID: Ga0208013_1048912
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1153
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020384	Metagenome / Metatranscriptome	224	N
F024807	Metagenome	204	N
F029468	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208013_10489121	F020384	N/A	MHHNKFHSYQKSLQKLRNIVSETLRSSGQGRQIEFDNQMRRAVRHIQIIKRNAPPDANGDLAMVEAYKLYDRLQRLSEYPTFFVDNTRKNPGRVSSDRGRPSSVRWDVAAMMAAPKGGPDRNWWRPPPRPAPVKHYTREELENE
Ga0208013_10489122	F024807	GAG	MTKRTFPVNLVYHDRDQQLTLALHDNPVTLTRDEVDTLIFHLDSFLIDMDKARKPQPSAEGADTHAEAHGEMLMAQYDDDPNPYHGDYSED
Ga0208013_10489123	F029468	N/A	IPNRDTWRPIHSARLKREIGHGTTSTNGVKFEEMNVRPKEQAEHEFDKDDVEEHQLKMNVACKDFVSEFIDCEGDVYYSTAMKAMNSVWQYEQSVKNTACTMVGPEWDHDKGVVGRWRYPHLRKGND