NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208013_1021406

Scaffold Ga0208013_1021406


Overview

Basic Information
Taxon OID3300025103 Open in IMG/M
Scaffold IDGa0208013_1021406 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1918
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024812Metagenome / Metatranscriptome204Y
F030157Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0208013_10214064F024812AGGAGGMPITKNNFSHVTNTELEGVETSSFTVDFINAMTAETGDLSTGSAVAGLEATRAVIGQYINILSEGPLVESDKQKTYTVRTDSLGTLISGGTLQTAIRALNGAGSVTATVSGATVTATDIGILTAAVV
Ga0208013_10214065F030157N/AASANTAGLQLAMEAIQNQGVNILGKGALGNSDTEQTYMVRADSLDTISSTTTVAAIQAAIRALNAMTPDKVTATISSATAGDRDMSDTQVA

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