Scaffold Ga0208013_1016569

Overview

Basic Information

• Taxon OID: 3300025103
• Scaffold ID: Ga0208013_1016569
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2237
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033796	Metagenome / Metatranscriptome	176	N
F036783	Metagenome / Metatranscriptome	169	N
F065669	Metagenome / Metatranscriptome	127	Y
F086976	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208013_10165691	F033796	AGGAG	MSSNDENKTYKVAGVHSGKKGVTVLDGNKRVLEEAEQSAKYLSGKYALENSLGITNFVAFNTHALTMLPPYSIDMEAEWNYVVE
Ga0208013_10165693	F086976	GGAG	MGGDKIPPIDPITGQFVRTLSGNKVYKTETELTKGLLNDEIPHELYVELIKVYHEAYEEAPEYGFTGVGCISFAESILQYHQDGVERRIRIPTLYDEYSFKQESNDE
Ga0208013_10165694	F036783	AGGAG	MEIVRQSYASHIDTRVYMDLGYGDMEVDVEEIEMVDGVMSGRAYCDRREIEMHLDHKDCQRALDKYEAEIDGLDAIHGEV
Ga0208013_10165696	F065669	AGGAG	MSKVVSPRVFIDTCESFFEEFGGHQRVIASAFAQYIHTNWDEYTGSYSDACGVRDILNNCYDLSIPEINVGQWSLYVHYNSNACYASKLVDRESKNGA