Scaffold Ga0208013_1008442

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208013_1008442

Scaffold Ga0208013_1008442

Overview

Basic Information
Taxon OID	3300025103 Open in IMG/M
Scaffold ID	Ga0208013_1008442 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3413
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	45
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008049	Metagenome	340	Y
F056145	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208013_10084425	F056145	AGGAGG	MRFEIEVSDEDWKLMLKNRYGHDNVITRSYMLDIVHDIIDQIHEVNK
Ga0208013_10084428	F008049	AGGA	MSEHHNNNWTDYLLCIGMELAYNKRGENPINEQLIIEKIQSLGGKL

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