Scaffold Ga0208013_1006326

Overview

Basic Information

• Taxon OID: 3300025103
• Scaffold ID: Ga0208013_1006326
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4121
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051547	Metagenome	144	N
F060433	Metagenome	133	Y
F071758	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208013_10063262	F051547	N/A	MIDPLLIATLSVIGGAILNTFRGFLGSSESTYDIKKFFGAVIVAVFTGIAVAQTLSLAGLGLIEVILIGLTVGFSVDYAVSKAKKTQ
Ga0208013_10063263	F060433	N/A	MEMSSIIETILIAVILGMGGALYGFFKKMNSTQADLCETVSRLQKTLIILAKAVDRQSNRLHPDTANSDLDDLVKELLDK
Ga0208013_10063264	F071758	N/A	MDEKCKKCKINKYGYTDGQHSIFICFKCGRYDGISGGDDLFVSKINEEPMLLLIMIKDKTLTPIS