Basic Information | |
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Taxon OID | 3300025103 Open in IMG/M |
Scaffold ID | Ga0208013_1005018 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4749 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 45 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006000 | Metagenome / Metatranscriptome | 384 | Y |
F006589 | Metagenome / Metatranscriptome | 369 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208013_10050181 | F006589 | N/A | LKELLEKRVNSIIETNDLTDMQVWGMWCGIGFISAFIVMWII |
Ga0208013_10050184 | F006000 | AGGA | MMNQTARRVIRVTPTITGVTYANNDILFDTTEVPLAVGKPGECSKLVSAMVSSKSNSLFDMELFFCTVNQSMGTVNSARSVSDSDWATAKVLGRLTLDSSADNYNYGNGRIHNFDRQSETYSTTDQWKSRFPVLLQAAAGSTSVYTFAFVAGTDVTPDFSVGDIELVLGVEY |
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