Scaffold Ga0208013_1001610

Overview

Basic Information

• Taxon OID: 3300025103
• Scaffold ID: Ga0208013_1001610
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10271
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031648	Metagenome	182	Y
F062151	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208013_100161012	F031648	AGG	MVEYNHNAVSFNADTTIKGNHGVIVSVYVSKSGSSGSKCIFKNGTSSSGGAEFTIFSEEQGTYVGINRRFEDGIFADITGNAEYTVVFK
Ga0208013_10016109	F062151	N/A	MSSFIYDAATTVINILNDNWSAGQVPEITKAWKKRSVGFVDDRRDQIVITPKAEKIQYFGLYGDDHWHDITIDLDIRTYQDDERHNDIVKESIRILTAKIRGGTDYTDLRVISSYTRNQYMRNMFNHILTVSIRKTNPS