Scaffold Ga0208013_1000296

Overview

Basic Information

• Taxon OID: 3300025103
• Scaffold ID: Ga0208013_1000296
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30946
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080152	Metagenome	115	N
F092734	Metagenome	107	N
F098078	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208013_100029612	F080152	GAGG	MRLKGLLNEAKKDLDIHREYEAGDAFAVPREKGRVFIILHPYHAAQGVKKWTGIEFVLDGKYSYMASADVTTAGDEQAFKGYKKIKLTSKMKKQIQQVLKDPEEIDRINDSDTKLRDVERAIR
Ga0208013_100029626	F098078	AGG	MFTTTQYWILPSGKVKKMRSGHEEYLTDKGISYGKAFTSGHIRLAVADDDGTPSAEWTKQATRPAKKALGSIVQKAEKRGGPGARLYYDFVDYNTGRIKYIKSGNTDYKGFLRLP
Ga0208013_100029641	F092734	GGAG	MKLQHTIKEDIITEGGDELNFEDLDSKQQNRIKAAQKVIGGKREYIMESAHGLIVAFKDIRYDHSNKTIRLSGKDLAGLAKLKVRWFDVSPVQQTVAVGI