Scaffold Ga0208666_1086576

Overview

Basic Information

• Taxon OID: 3300025102
• Scaffold ID: Ga0208666_1086576
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 796
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F070089	Metagenome	123	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208666_10865762	F070089	GAG	MKVGDLVKYESVLNDSMDRYTVEYGLVVQLSKTGHDTLSVQVLFGDTGKPCWLDSGKLVVVSEAG
Ga0208666_10865763	F079212	AGGAGG	MNQGEKELIDRCIESHYNMIRMHRRAIIELSRKMLKEPEMCTECFDFEIINESR
Ga0208666_10865764	F018286	AGGTGG	MKTLTTFILLGMVDSFDEHFATVELNTNPASNGGPATAVMPVNAFPCEIYEGRVFYIVKLHDNQDAVIICQEEAKDEPRRERTD