Scaffold Ga0208666_1041083

Overview

Basic Information

• Taxon OID: 3300025102
• Scaffold ID: Ga0208666_1041083
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1342
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F008924	Metagenome	326	N
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208666_10410833	F025411	N/A	MSITRVYRDRDNKIKVKKFSFEEVKKDLTKFFSHDNGISNRKDKNETKRLIKHSTDS
Ga0208666_10410834	F003531	AGG	MKRKVWTQNETELARQLLKKHSYATVGKMLHRSKNSVIGQFYREKIMNGYTPDPFSKYTRKKEKNIYVDN
Ga0208666_10410836	F008924	GGA	MNRSEVINSYIEEIDLYKEYRHAYDKATELEFFDKQQEADYYYEYAQQLKKKIDNGETILYKVNF