Scaffold Ga0208666_1022054

Overview

Basic Information

• Taxon OID: 3300025102
• Scaffold ID: Ga0208666_1022054
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2005
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004220	Metagenome	448	Y
F018451	Metagenome	235	Y
F043623	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208666_10220542	F004220	GAGG	MVEKDKLDWCYYFKSIDRWIRVCSKDMNEGFSVFTKQTRVKEHYKKIADSGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESHSGHTKMFHKENGKWLQL
Ga0208666_10220543	F043623	AGG	MFKRIKKSEDDPTLEQAQKFVKGWVERLVLSTGTLLVDEEARMKRGIKKNKAASFLANKDGYPEILGPAIFIPHEVKSEWY
Ga0208666_10220547	F018451	GAG	MAANKYIDVVSPNPNAVLPKDYKFNKIQHSPKVLQIVDGMLGFEYNGTYIVDPTLDETGRFPVSATTYYKISTKDKNRMIKHNIKI