Scaffold Ga0208666_1014441

Overview

Basic Information

• Taxon OID: 3300025102
• Scaffold ID: Ga0208666_1014441
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2626
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000379	Metagenome / Metatranscriptome	1211	Y
F005266	Metagenome / Metatranscriptome	406	Y
F057435	Metagenome / Metatranscriptome	136	N
F077787	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208666_10144411	F000379	N/A	NKIDYSNKHDIMVGYIDRSDNVVAVETGWVSTPKHMTQVLMGQYNSKEMAQELVDSPTLMPTFKKDDYWYVDGFGDVIESNLSWNKECMRKNVGHLFLFMKGTWQYSDNGIDWEPANFLTIQEVA
Ga0208666_10144414	F077787	AGGTGG	MSEKQFKVVLSFDVQKTIIVNAKDEDEAYDLAYAGEGEIDNVDYEFRDHIETEEV
Ga0208666_10144415	F005266	AGGAGG	MSVHIRYRFYKEKDHYLEDERMTRGYTLVEGDEPTPFHVVLKEFYKDMKNRAKVVNIWRTKSGEANYRMEEEERLSWE
Ga0208666_10144418	F057435	AGGAGG	MQKQIERQIMLFTEATGVTERAEVIHGTLFVKFHNPEDKEWFRISLKNFCKIFINNDTGVNANEVGDEFAYDIVPAKDETTWNTTETQESNISTQLDLQEGK