Scaffold Ga0208666_1012824

Overview

Basic Information

• Taxon OID: 3300025102
• Scaffold ID: Ga0208666_1012824
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2830
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F051059	Metagenome / Metatranscriptome	144	N
F087896	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208666_101282410	F028349	GAGG	MQVRTYHKNGKAVQFLGYSDIDASNAAKVVMGERGDVGYFKPRLGTGEWIYDWIYVKETTDEDLQRVLDK
Ga0208666_10128243	F051059	GAGG	VYYALDIYSKTTKKMFAYHSSDSRKDILYLKDLYAKNEFVYIKECFGETDEDKEIYRKSAKYGDTSVAS
Ga0208666_10128248	F087896	AGGAG	MNYKTAQGAIISDDGYNRVVKQLNLGYGWEATLYDNDRLVLTQDATGDTLSIPPESTKTLRDIITSITEEK
Ga0208666_10128249	F020815	GAGG	MRLYMNKQGEWVGTQAEAKKIKADMVEVPTDKPNLLKWLNTFTGAIDDAAKEVIDNKPDPGTVARKPHKYDFWDNIRDVAENCSLTDFNVALAVFMDRVHDIADKQKETQQ