Scaffold Ga0208666_1012322

Overview

Basic Information

• Taxon OID: 3300025102
• Scaffold ID: Ga0208666_1012322
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2899
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028777	Metagenome / Metatranscriptome	190	Y
F057387	Metagenome / Metatranscriptome	136	Y
F081225	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208666_10123225	F028777	GAG	MLGLFARNKHSNLEILFLEKDISEFRKIRYILEVEGRICSLDPEFSTSGNLRKAVHRLNRDYNSKIYKEECNCNFKVGGKLNMDGTPRKHYAYIKDWAS
Ga0208666_10123226	F057387	AGGA	MSKLSKPLQAFWNNQIANDNVKAAPFSGNCMFCTKAITEQDEDHSVCNTCWADLGDDE
Ga0208666_10123228	F081225	N/A	MMVGTIGTVVSIVGGDMVNANNRRDFKAEEYDLYDVRKARPFWNQVCEANQWQVIKDEEDFAEDYVCKILNNLYVMELQVVGYWHNFNKDNISNLWISASKVDNLKKKAQAKNTRSGLIFLNCVPNRFIGIDIEEIKESYKVNKASGEKSYKIPLQKIYYLYKELLDTNFCDCLENHIDIMEQGNGRIPMAQRNVNLRGKNGICC