Scaffold Ga0208666_1008343

Overview

Basic Information

• Taxon OID: 3300025102
• Scaffold ID: Ga0208666_1008343
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3676
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005656	Metagenome	394	Y
F022777	Metagenome	213	N
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208666_10083431	F025411	N/A	KKKRIYMSITRVYRDCDNNIKVEKFSFEEVKKDLTKFFSHDNRISNRKDKNEIKNFIKATKSS
Ga0208666_10083432	F005656	AGGA	MKLRTLLKLQKAVEEREIPYDVLEFDSTHYSRSKDMTVDILDLHLIHAIRILNNYLTDSQYPEYSDRQEINDNLKGISALNKRIEERVDDLKEVVNK
Ga0208666_10083439	F022777	N/A	MSTKPETLFYKQIFRELKQVFWSRIENRHGGGIPDLYGVYNGFCFWLECKTIIKQNRINISPLQISWNYKNFSQNPNNFYIVQAPRRKIIKLYDGNKGRELLENGFDYPCTLEFEPRSYNLLLD