Scaffold Ga0208159_1038289

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1038289
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1049
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048640	Metagenome	148	N
F053632	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_10382891	F053632	AGGAG	MKLYKNSDGVWAGTQLDARKMCGKDYSTVDVPVDKPGLLKFLNFNQVGSHTSNDKNETHYEVYIPSEHRDNDLDSKALSYFSWGYDKLCSGQYDEGKELIRKAL
Ga0208159_10382893	F048640	AGGAG	MQPKGLHAHARIKYKPTRIQNQLECRLFGKTFRSVAEAARHYGLAPSTAYEYHHQRLHREIFPNRKRWNTWK