Scaffold Ga0208159_1028170

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1028170
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1295
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000999	Metagenome	809	Y
F028775	Metagenome	190	Y
F036657	Metagenome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_10281701	F028775	N/A	KALDVVMESGTPDSLAVALDQVSKKIGLSWNQDLQALPNFKN
Ga0208159_10281702	F000999	GAG	MDIEKLLEDVTKIEEQSEFVVSWFAKKYNKTIRRVGHLNKIGCRTWEDYKGNKLMCFWDPIINRYTTCINPVITYKKARN
Ga0208159_10281704	F036657	AGGAGG	MNNSTQFDYDEIKQAWKNYRNESLEIFHYGFELELEKIAKKKEFKDRLGAGND