Scaffold Ga0208159_1014036

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1014036
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2064
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004549	Metagenome / Metatranscriptome	433	Y
F063163	Metagenome	130	Y
F067200	Metagenome	126	Y
F081884	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_10140361	F063163	N/A	QEWNDLARNAGRRFTPAAAHEPEQPAFDFGDVEMQEHLSKLPHQLKETG
Ga0208159_10140362	F081884	AGGAG	MRRAIINLNNYEEATEFLKRTDYIHSDHFKLYKDDSFPNLNMPWHLELEYWIDQNGYHDHFLIIKSKPKKDYPEVYATDGNSLPGDDEEKMMDFDYYLPGTRIDESLFKYSPHYMDRCSYEFVGFKKFYFERDLGTEEKKKLKRDGEEVVRHESTHYLSGAENNKEAI
Ga0208159_10140363	F004549	AGGAGG	MNIKKFKSVAVAIYTYKLLKKLAADDDRSVGMQITYLVKKEATRRNIAH
Ga0208159_10140364	F067200	N/A	MKTETIMPKFRSYRKFKPEWKYERKCCNSCSREYLTDNMMCQEEGKNINIWYCIRCYNSLQKS