NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208159_1013873

Scaffold Ga0208159_1013873


Overview

Basic Information
Taxon OID3300025101 Open in IMG/M
Scaffold IDGa0208159_1013873 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2081
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044224Metagenome / Metatranscriptome155Y
F046070Metagenome / Metatranscriptome152N
F048244Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0208159_101387310F046070N/AMNLKRIKELRNVVHDAQSKMDLISKRVMQGGLSLDQQILHLDNFAANQSRHMLGNEELYKLLKNE
Ga0208159_10138732F044224N/AMKLNKIIQSYKNSNMNKDLLSYKLKNYYNLNENERLIIKNSL
Ga0208159_10138736F048244N/AMKVELTQKEIDRLYFDLKNYVKTTYYVDRLNELSESDKEECKIELELIEKFSKL

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