Scaffold Ga0208159_1013873

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1013873
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2081
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044224	Metagenome / Metatranscriptome	155	Y
F046070	Metagenome / Metatranscriptome	152	N
F048244	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_101387310	F046070	N/A	MNLKRIKELRNVVHDAQSKMDLISKRVMQGGLSLDQQILHLDNFAANQSRHMLGNEELYKLLKNE
Ga0208159_10138732	F044224	N/A	MKLNKIIQSYKNSNMNKDLLSYKLKNYYNLNENERLIIKNSL
Ga0208159_10138736	F048244	N/A	MKVELTQKEIDRLYFDLKNYVKTTYYVDRLNELSESDKEECKIELELIEKFSKL