Scaffold Ga0208159_1005694

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1005694
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3771
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F037769	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100569410	F037769	GAGG	MSYIQTQTDKEDEKLLRRLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQVFNFTEEECNRLIKEYDILSSTTKEVIMNPAPNFNATAPNDVKDYSANLWQARKCLSDAKKLISATALTPRDYNNQDDFQDALLHRLHLAEHFVSINKYIDEHLDYAKSHIPPQTP
Ga0208159_10056945	F006793	N/A	MTNTRSNNEQMEERVNYAADQLAKGKRAMDISKKLASKYNVSIQQARDYVRQAKPVLTQSISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSARESEGDYLFRNFSEVAKKRKKKYGDLDALDNTDIPF
Ga0208159_10056947	F016820	N/A	MIKKEFSYIVFSKAGDNVQEIVGVYKDLDGAAYGAKTALSTLFPNHGDKAEIIRCEIISTEEARVTYEKTKPKDIFEKCEDGFCPMPTPQTQEVS
Ga0208159_10056948	F012584	AGGAG	MKLKPYLPENTFILNEDSLPKEHDTDRFGKIMVFRKDIGWSVISQTDAVQFLAMKHTHWTYTPDTPYD