Scaffold Ga0208159_1005095

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1005095
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4071
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007259	Metagenome	354	Y
F007344	Metagenome	353	Y
F032626	Metagenome	179	Y
F085565	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100509510	F032626	N/A	MDKENLQTKVEALQDNLKVKHDELTEVQEQLTVARRELANANKPTLLQDDMVNLVDLLQGMFHDILNDADTSDLSPEFSIDYGNEVRLDCIDMSAIEVHSGDIESVLEQIFNIVSDNS
Ga0208159_10050952	F007259	AGGA	MIFDTKLRAEVKIQRDAVHQLLKHHLPKCELQLIGDSEIQLTWHSNPSCIRETLLTCSMYGDWQFEEHQWESFDNYHYSTDLKVDYTSPANEVVNALMKLL
Ga0208159_10050955	F085565	GAG	MYLTILSYDILRGNEVITYELPSYAAKFQCEDMEEYISVTLGFNTNNIDWQTHEELPQLVELHNQEYA
Ga0208159_10050958	F007344	N/A	MTSYEQRAYDALAMKLTEAGYAYENTSWANDATASISVSCARVIISEGEDEVQQFEFQIYIPNCDYFDPDNEYFNTYALTDEMTGHTFDFDRADEVVEHIQNCMRDVVFTN