Scaffold Ga0208159_1004836

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1004836
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4213
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034391	Metagenome / Metatranscriptome	175	N
F049006	Metagenome / Metatranscriptome	147	N
F093906	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_10048361	F093906	N/A	MMMFLNTNGRKGTGDFNVDFDFTDKQIELLKQYGDLITAIYYSEKNNKGKLKIQTIEYPE
Ga0208159_100483612	F049006	N/A	MTKFEFIDVCSRHGVNQWLVMDDLLLSGNKHPHDLTVLELNEFMWETY
Ga0208159_10048366	F034391	N/A	MTKYSQQYDNKLLEGILDHMANELKSEFGFSTLDEEDTLDIISLFVDNPDKYETAYLYSIETEDTEVVSSKEKSNVEILKNLIDYNRYDG