Scaffold Ga0208159_1004008

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1004008
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4750
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002281	Metagenome / Metatranscriptome	575	Y
F020817	Metagenome	222	Y
F060421	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100400812	F060421	GGA	MYNIFYEHYKKRDGAIYKDLAYYKHKDRIKMLNEFILHCMDSTERITSNKKLYKQYKSLIKANKQAIRFYCKLKKFCNKNKHIKGFVQDV
Ga0208159_10040084	F002281	GAGG	MKINYPKVAEHLGVPLRGNETFTELLEIEKQVKEHKERLAEMNANIQRVDAQVKGVKKW
Ga0208159_10040087	F020817	GAGG	MMYLILKERHYSNIENSYDIVASSKDLDVINDKLKGYQLINDDKNNTYSIVRYESPLLLTEEVA