Scaffold Ga0208159_1003425

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1003425
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5241
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F009070	Metagenome	323	Y
F027536	Metagenome	194	Y
F055654	Metagenome	138	Y
F087042	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_10034251	F087042	GAGG	MNIEQICIASFKSMFDERLADGVDLTPTYIEMLVKEHCEPYMIVTQGFTHDLLANALDSMDWFYISRFLKHQIDIHIYAEEFGNVT
Ga0208159_100342514	F009070	AGGAG	MKLAIVIDVDGDIMYVPEGKVFPNFPEPKIFDSIEDAQVECDKWNTGVIVDIDDNNRRVPIIRSFDDEERRRAKEREEINKDDGTSTGKDTTQ
Ga0208159_10034254	F055654	GAG	MEIIIDCDNKELAKALADRLSKDTGVARDKFKETTDEVVDTSSTDTR
Ga0208159_10034256	F005813	GAGG	VKLYKNSDGVWAGTQADARKYCGKGYSTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPTHEAMSWFRWAHDCMLRGQYKDAEAMLYKGLKDDRTTTSDG
Ga0208159_10034257	F006217	GGA	MIELLLAMVEEQNPIHKYCMSKHEHWTGRAACVQQLQHVQRKMEVEELRQFLKENPHYRYPGMALPNGRIKPLDVCWGSSKTYGTKGVC
Ga0208159_10034259	F027536	AGGAG	MQASGWRYKVTPIDRVINDCRRRADDAWWDGNDEEARLHEQEQKLYELDKEEGILWVPNF