Basic Information | |
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Taxon OID | 3300025101 Open in IMG/M |
Scaffold ID | Ga0208159_1002608 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6193 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (28.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.198 | Long. (o) | -77.499 | Alt. (m) | Depth (m) | 38 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000126 | Metagenome / Metatranscriptome | 2021 | Y |
F068825 | Metagenome | 124 | Y |
F091885 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208159_10026083 | F068825 | N/A | MQTIKFLKPSLTTGKQKIKLNNITYKPYTICELANTKFGEVDRDGFSFITDWFNYKGFTYIAD |
Ga0208159_10026086 | F000126 | N/A | MRDFIITKKKGELYHAIVTDSYGNKYENFFEHANEANDWVYYVWSKEEWFNSVNSQELLANAIENCKQIDSKLNVREI |
Ga0208159_10026087 | F091885 | N/A | MNDVTGVVVQNILQEKLNKYQIYYNSSYQYGDYDMSDYYAAKIKELKIKLSKLV |
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