Scaffold Ga0208159_1002123

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208159_1002123

Scaffold Ga0208159_1002123

Overview

Basic Information
Taxon OID	3300025101 Open in IMG/M
Scaffold ID	Ga0208159_1002123 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7058
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (20.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)		Depth (m)	38
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009493	Metagenome	317	N
F030253	Metagenome	186	Y
F033012	Metagenome	178	N
F047926	Metagenome / Metatranscriptome	149	N
F058949	Metagenome	134	N
F095404	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100212311	F047926	N/A	MWVEIAKNTWAKAKNDKDAKRILKKYKGYKKKQGDLTSRHFIVNYIEDENTIK
Ga0208159_100212313	F058949	N/A	MFDNNSYEYKKAIRAKACRTFGPTIALDLFLEFIGFWDAREYSSANDIRTEAKDMHLNNAVSFMNQYTDL
Ga0208159_10021232	F033012	N/A	MQKATVTAAQPTGQWEGQYGVMYTFNVTLSDGTTGEVNSKKPQLRFGIGEEVEYSIPREGKLKLDRPNEGGFMNSTPSAKPSYSGGKDYSKQHALNAACTFLNGSKATKEQVVALADYFATWLKGSAAPQIQQASPAETAPAPAPAASSFESNGLPF
Ga0208159_10021233	F095404	N/A	MHYLTNYTTDKVKLAYMYSEWLRHNWRSLPEERIEQLLSQISELTNVDFITQQYDSKL
Ga0208159_10021236	F030253	N/A	MLKRYFRKKLHLRFVNKYLADTRWDIINTVITASVTEYNEAITDHLDNLGKLVRKYERRRRWLNF
Ga0208159_10021238	F009493	N/A	MKKRKNKEIVITLGKVPSLNSFYAGSHWTKRKKAKDAALEEIKSQLGFNENASYHSFRITAYVRYRYDLDNSIIAVKFCSDALKALGWIKDDSPKHFRYLLLVWQESIPTNTAKIAIELSDEYPQ

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