Scaffold Ga0208159

Basic Information
Taxon OID	3300025101 Open in IMG/M
Scaffold ID	Ga0208159_1001992 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025101 Open in IMG/M

Scaffold ID

Ga0208159_1001992 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7318
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (91.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7318

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (91.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.198

Long. (^o)

-77.499

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012529	Metagenome / Metatranscriptome	280	Y
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F032993	Metagenome / Metatranscriptome	178	Y
F051059	Metagenome / Metatranscriptome	144	N
F087896	Metagenome / Metatranscriptome	110	N
F090997	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100199212	F032993	GGAG	MKTRKIIGSLPNMEIPQLPVSLLSHMEAMGLLPKSHEDDGVNDIEIPWRSNTNYFRRDVLDENNEPLF
Ga0208159_100199213	F051059	AGGA	MYYALDIYSKATKKMFAYHSSDSRKDILHLKKMYAKNNFVYIKECFGETDEDKKNYRQSSKYGDTSIAS
Ga0208159_100199214	F012529	AGGAGG	MIEDKTYKVKVGDHHDAVIFVYERHRKCLNPDDKPEDHRWKHWKEVVTVIPVFDDGDYQDSEGVLLNNVKVTVDALSELYSGCPDYEMGIEYTMNTHQYINV
Ga0208159_100199217	F087896	AGGAG	MNYKTKQGAIISDDGYTKVIKQHNLGYGWEATLWNNDRLVITHDATGETLSIPPESTQKLRDIFAAIKKETNNG
Ga0208159_100199218	F020815	AGGAGG	VRLYMNSKGEWVGTQAEAKKIGADMVEVPTDKPNLLKWLNTFTGKIDEAAKEVIDSKPKPGGVTLKAHRWDTIRECAEKATIDDMTVALAVYMDRVLDIADKQKETQQ
Ga0208159_100199219	F028349	GAGG	MKVKTYHKNGKAVMFLGYSDIDASNAAKVVMGEMGDVGYFKPRLGTDEDIYDWQYVKEITDEDLQEALGR
Ga0208159_100199223	F090997	AGGAGG	MRIRVLAEETVYKECFVDVPEHILEYSKDRLSKTYLKNAIHNWLSKNGSDFKWADYDFSFDPYTWEEVQDND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208159_1001992

Overview

Ecosystem & Geography

Associated Families

Sequences