Scaffold Ga0208159_1001241

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1001241
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9666
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001724	Metagenome / Metatranscriptome	645	Y
F015078	Metagenome	257	Y
F043887	Metagenome	155	Y
F057293	Metagenome	136	Y
F060050	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_10012411	F015078	N/A	LKDLFCTMGQGSNYWATDVTIGNIEVEEDEGVTYIKSGQDYEYEGCCIWLKELTLESPITVEDIEEDKHQFKVKDVLKAIEKIISGKTDLNSDDCWSVHRSFMTDDLSLIDASIADSILQIMTFDSLVYG
Ga0208159_100124116	F043887	GGAG	MDESTILKIAKYKCTLAELDRQYWFENLDENYFKINYDRITEEIRRLEQ
Ga0208159_100124122	F001724	N/A	MADKLVEKNKQLEDDKPDYQEKITFLVSTVAQGFILTWCLLVLSLGYVKLPNKLFGVDIPDQPRVDSTFAAGLLGNILGGLGISVNAAQGAKKKKKENENGVIGDSGGGTSTIIIRQPIELITSKPDVVKVDSTKPKT
Ga0208159_10012417	F060050	GGAGG	MTNTQKLKRLDYLSSLPYRDHTSEMWDEELALECELQNHPLYKSYPDQ
Ga0208159_10012418	F057293	N/A	MRKINITVYVNDEYSLYDILKEVRSEIDRKVFDRDNIRQRKFSGTWEVEKDYKSPAWPYYGNYETVAKWESNVVPNKEFIQFQKEKI