Scaffold Ga0208159

Basic Information
Taxon OID	3300025101 Open in IMG/M
Scaffold ID	Ga0208159_1001100 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025101 Open in IMG/M

Scaffold ID

Ga0208159_1001100 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10315
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (16.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10315

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (16.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.198

Long. (^o)

-77.499

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029278	Metagenome / Metatranscriptome	189	N
F030436	Metagenome	185	N
F038672	Metagenome	165	N
F056150	Metagenome	138	N
F073424	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100110011	F056150	N/A	LNNKLIKKIENFILYIGREYKVVELEDFKQDIFILLLQKGEDFILQLDEENSIKKYVYKLCIYQIISERGHYRTKYYIPSHFSSIDEIETYNNSCFKDEVLNDLINSLDGLDKIMMEQLLLCSGNKNCLAKKSNIHQNTIQYKFKELANKIKQKWTLNEFYT
Ga0208159_100110013	F030436	N/A	MKTTLERIAELIEEYNSTDIFDGNKLNQQLKELTSRLYHIETMRTKAHESYEKVIHNKVAEGFSVARATNEAKVEVPEMYQLRRLLESGYRVVDAMRTNISFLKSEMYNVTKEY
Ga0208159_100110017	F038672	N/A	MNELDVILRKNKLDIMIIKASHQLEKKKDKVKQEGLETLMNILELIHELQDEIRHQRKQIAKLKYENAVAYKENAILKTDFDKYKHNLIKAELDSPNLKK
Ga0208159_10011003	F029278	N/A	MNITIPTKWEDVTIGNYINLRPILNSELTPIQRVVNILAVLTGEKKEVIKNISLDQYKTIKEKMYFLETEIPKKLKDKRFKIGGKYYEFKLDAKSLLFGEYINNMEILQNAKDNEDVIFNNLHHILTTICRPVEKKFFRWRDIKVDGELLRKTSDNFLTNMPITIAYPIGVFFYNHLDTLTETIKTSLIEEALRLKREAAKEIASVKSGGGGQP
Ga0208159_10011007	F073424	N/A	MKLTPKEIKEQKALFGSKAVNYFIRFMEAKKRWRRLPDYFIKQVIENSEKI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208159_1001100

Overview

Ecosystem & Geography

Associated Families

Sequences