Scaffold Ga0208159_1001044

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1001044
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10609
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003751	Metagenome / Metatranscriptome	470	Y
F004325	Metagenome / Metatranscriptome	443	Y
F035329	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100104416	F035329	GAG	MATRKALVLVSGLFQELNSSADKLDFAGNSTTDLSEGT
Ga0208159_10010442	F004325	N/A	MNKKKKPTTNEKADKFLASLGTAGGPIGSPQLVEFGGQDIMNQVTAGNRDEYANIRMKKGDTSVTQPSKMPQDLDASYLKLNLPGSPLPANGMMAPRNMMNAEMVQNQIRASEQQFLAQYLPAAGLSQLPVGQPPLESKKEKK
Ga0208159_10010445	F003751	AGGGGG	MATYKSDAGAILEPGNQINQLSSFNNEAVHGWPGIDLFEQIGFVKVSNLTADKANNKSFNITIPSPDRRPDDRVRDDRTSLVVKASSARPAYVYQASLSIAKDIPELVTSLRSFPAFPVTADLQGTNGEFLLLGPDNSGSPFGVPSTQQNGLAAASSLLDIGASGIAQGTGNTSTDGTNDGIVPFVSVVTGGGITAANLANSMMFKVTGDTTFKVYNVNGVTGTSVNGDGVFISQADSDAGKAAYIVCRVNYLRASRAVAWNDIQDKIDFASQVGGNDS