Scaffold Ga0208159

Basic Information
Taxon OID	3300025101 Open in IMG/M
Scaffold ID	Ga0208159_1000901 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025101 Open in IMG/M

Scaffold ID

Ga0208159_1000901 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11488
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (82.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11488

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (82.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.198

Long. (^o)

-77.499

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005819	Metagenome / Metatranscriptome	389	Y
F022417	Metagenome / Metatranscriptome	214	N
F028777	Metagenome / Metatranscriptome	190	Y
F050395	Metagenome / Metatranscriptome	145	Y
F057387	Metagenome / Metatranscriptome	136	Y
F081225	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100090113	F028777	GAG	MLGLFARNKHSNMEILFFEKDISEFRKIRYILEVEGKICSLDPEFSTSGNLRKAVHRLNKDYNSKIYKEECNCNFKIKGKLNMDGTPRKHYAYIKDWAS
Ga0208159_100090114	F022417	GGAGG	MAHMPKFLEDYTTVDELINKMNTEYPECRLIAEMIGYGDDWVIFKSSFYETKEDTDPKAVAYAKQTSKDHNSWFEMANTKANGRCLRIVFSESTLAEEMIGIAPSKDADPEKSNLDKKVEALEAEGLVTDISHKAQAVMNSIKDFAMDCTSQDLDKARLLTASALTELGIRKEDVSITNLQAVKDKIQDIASSEKAS
Ga0208159_100090115	F050395	AGGA	MYPIKSKNKFTWAYKFLYWNSDQNIVYLYTIETKEGFQVAESAAWGNATFDGCNNMKYIGKNKMEVENGTYA
Ga0208159_10009013	F005819	AGG	MDYIDDMSLALPNQQQVGESNIDFKRFQYYLGLGAGRTLTKVSENFSLTERRIYQISSKNQWQDRVKAINKMLNEQIIGEVFAQVGETARDLANELKPVIFRIINEINERDLASLNPTELKGLLDVCYKMISQIYGLGTPQVTVNHIEQPQIKFKWDWEQDDEPDY
Ga0208159_10009017	F081225	N/A	MMVGTIGTVVSIVGGDMVNANNRRDFKAEEYDLYDVRKARPFWNQVCEANQWQVIKDEEDFAEDYVCKILNNLYVMELQVVGYWHNFNKDNISNLWISASKVDNLKKKAQAKNTRSGLIFLNCVPNRFIGIDIEEIKEAYKVNKSSGEKSYQIPLQKIDYLYKQLLNNNFCDCLENHIEIMNQGNGRIPMAQRNVNLRGKNGICC
Ga0208159_10009019	F057387	AGG	MSILSKPLQAFWNNQVANDNVKATPFSGNCMFCSKAITEKDEDHSVCNTCWADLGDDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208159_1000901

Overview

Ecosystem & Geography

Associated Families

Sequences