Scaffold Ga0208159_1000808

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1000808
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12179
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036426	Metagenome / Metatranscriptome	170	Y
F053634	Metagenome / Metatranscriptome	141	Y
F087892	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100080818	F036426	AGGA	MRSLIIIAMLFSTVAFANDYAPTQNDRINLYKVNSENENAPMYSGYYRDSEGTVHRVAVWSGASDNYLEGSVTIPTSQ
Ga0208159_100080825	F087892	N/A	MTKYNEEDVVSIIHEMKWRDEKISELEEILHNKNIHELRKQKPWNWRKILGWSTVGSIVSLLPVFAYGRNAWQMTAYYINKALWESKEFWY
Ga0208159_100080826	F053634	N/A	MGVEGVLVLMNEVIKKITQIISDIHDRQSQHSTEILKSRYEVLELLKILKDYNLITTEDISRIYKKGEDYEQSSNESRGSSGDIHQSVSKS