Scaffold Ga0208159_1000396

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1000396
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17769
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (98.15%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025385	Metagenome	202	Y
F035970	Metagenome / Metatranscriptome	171	Y
F055213	Metagenome	139	Y
F081232	Metagenome	114	Y
F090864	Metagenome / Metatranscriptome	108	Y
F095340	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100039614	F095340	GGAG	MINYGDLVRVTKGQYKTHIGIVLDYRNTGRFYPSTELTIKLPNGATIIKDIDYIEKLGDNND
Ga0208159_100039617	F055213	GGAG	MTKTQRFGRPQVGELYVSSTQGRIHILIGYEFVYKSRVDFYKYYKATLKRLDDGASQRWEVAQHEFYKKYKPLNMETK
Ga0208159_100039637	F081232	GGAG	MIEIGTLVRLKFKSVRYGRYKLVSEKIEHDEDKPVGIVVKRGYSGHKGPLVVKWINGNAEIGHPTGSIGYFDKYNVEVIA
Ga0208159_10003966	F035970	GGAG	MDNNLRIILQTAQELAEEYGKHSWQGDCNDFTQASSSVSQELTNLEVERLWDEYANQELLAGGVTFNFHRKGRDKLITISQTDKNCPPK
Ga0208159_10003967	F090864	GGAG	MIHLVKHDKVGAGYALQESDGRWVVRFFYNFHKHFEFTKHAFRQGYLKDCGAINIGETEWTTT
Ga0208159_10003968	F025385	AGGAG	MSYFTDDNGVIKSFMSQTACKSKTLRTDGQSLWSFDTRIAEHVPDGNGNAATLVYDYTYGGGNYISQTTSNHVRLTKKQVPRQNWMNVNEAQKHGLCPLVESRNDTPRKTR