Basic Information | |
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Taxon OID | 3300025101 Open in IMG/M |
Scaffold ID | Ga0208159_1000215 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24348 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (89.13%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.198 | Long. (o) | -77.499 | Alt. (m) | Depth (m) | 38 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003976 | Metagenome / Metatranscriptome | 459 | Y |
F010318 | Metagenome / Metatranscriptome | 305 | Y |
F010532 | Metagenome | 302 | N |
F010571 | Metagenome | 302 | Y |
F028971 | Metagenome / Metatranscriptome | 190 | Y |
F031261 | Metagenome | 183 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208159_100021526 | F028971 | GGAG | MVDEIKDTELTPMTKAEYRAWEDYVIKYNEDNPKHPICYELTWDKDEYKVKLLDLKVDREGQE |
Ga0208159_100021531 | F010532 | GAGG | MNRTLYKKLEDICAREYILNKLSSSKFRTFVDFLYDDIRTWDEPMNVSEVDIIHRIEEHMSYMVSSYLTKSYEGIDMEQEALKQA |
Ga0208159_100021533 | F010318 | GAGG | MNVDSDKPRYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSGQYEGDQGETDWKWSAQENILTEGWSLVEGLN |
Ga0208159_100021534 | F031261 | AGGAGG | MNRTKTYVMTVDKNSSNVLEQLNKLQQVRQSVSLLNKHSTKKHYVKCQGRWGYNNPDYNQRTIPFCPLDKAVKWDVYIYAR |
Ga0208159_100021536 | F003976 | AGGAGG | MGKVRDAYYEEKLDILDTLEKLDMSVRLLNVWVNEPMGFENAKYLLEKNANQKFDWFSRDMVKELVEEETYG |
Ga0208159_100021538 | F010571 | AGGAGG | MSNIITETYADKLYEEQYEKHYQELSKTSDDVDWIENEAERLALIDLDNFEMEG |
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