Scaffold Ga0208159_1000215

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1000215
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24348
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (89.13%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010318	Metagenome / Metatranscriptome	305	Y
F010532	Metagenome	302	N
F010571	Metagenome	302	Y
F028971	Metagenome / Metatranscriptome	190	Y
F031261	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100021526	F028971	GGAG	MVDEIKDTELTPMTKAEYRAWEDYVIKYNEDNPKHPICYELTWDKDEYKVKLLDLKVDREGQE
Ga0208159_100021531	F010532	GAGG	MNRTLYKKLEDICAREYILNKLSSSKFRTFVDFLYDDIRTWDEPMNVSEVDIIHRIEEHMSYMVSSYLTKSYEGIDMEQEALKQA
Ga0208159_100021533	F010318	GAGG	MNVDSDKPRYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSGQYEGDQGETDWKWSAQENILTEGWSLVEGLN
Ga0208159_100021534	F031261	AGGAGG	MNRTKTYVMTVDKNSSNVLEQLNKLQQVRQSVSLLNKHSTKKHYVKCQGRWGYNNPDYNQRTIPFCPLDKAVKWDVYIYAR
Ga0208159_100021536	F003976	AGGAGG	MGKVRDAYYEEKLDILDTLEKLDMSVRLLNVWVNEPMGFENAKYLLEKNANQKFDWFSRDMVKELVEEETYG
Ga0208159_100021538	F010571	AGGAGG	MSNIITETYADKLYEEQYEKHYQELSKTSDDVDWIENEAERLALIDLDNFEMEG