Scaffold Ga0208159_1000130

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1000130
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29832
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (72.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003361	Metagenome / Metatranscriptome	492	Y
F005819	Metagenome / Metatranscriptome	389	Y
F006940	Metagenome / Metatranscriptome	361	Y
F089558	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100013020	F089558	N/A	MDSLEEFQNKHGRNTGQFASQRYILDNSDARSIFIEIAEEAKEKYISDTIAAQYLVLNFEHFKHLSYNTVRRYFRDYRDGLLK
Ga0208159_100013033	F006940	AGGAG	MKRLKLDDISNPPALKTQEVELKQWDKSVVVQGLTKADTVEINELSENEDGIRDDVLFEKYLILKGMIDPELDSLEDVNNFYTKATPQLIDQILIGIYKCMAWTKEDQANIADQFRE
Ga0208159_100013038	F003361	AGG	MKFTINGALDLSKSINSQSIFNKRSLETFNKLGQELKRESKDRLRLPPSPSSKSKKSTGKTRDSIFVAKLSNTNRLRMSTGIKLASDSRTAIFLHGKPIFRSFRPVKRTKPFFPPYQKGSSLAQWAARGTPKLNAFLVARAISRRGLKMKPFIGGTVFENQKKIKKDLDKMMNNIAKDIARSIK
Ga0208159_100013045	F005819	N/A	MDYLDNLHIPFPHQQQIGESNIDYKRFVYYKDLGAKRSLKKVSEFFGVTDRRIEQISSKNHWVDRIHAINKVENEQIISTVLSYVGETARDLAEEIKPVIFNIISEISEKDLRQMNPTELKGLLDVCYKIIAQIYGIGSPQVQVTNVEYPQINFKWDWEQDGDTDY