Scaffold Ga0208159_1000117

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1000117
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31133
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (80.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003286	Metagenome / Metatranscriptome	496	Y
F049939	Metagenome	146	Y
F084735	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100011712	F003286	AGGA	LGRDWERGILIMAVQLLDKTLVMKPRRSHHVKPVRVKEVVDETIENVYGEPKADRFDEIIGLLKQGNTSAQTDNITLGAVDVPIEKQIAIDKVSTKGLKSETYKNDSKSKLDKLRKLRRG
Ga0208159_100011724	F049939	AGAAGG	MAYRVVMELLPRPDDIPTWVWNETSTSGAKGTGIGSTGGKAWVAKLNSSDSIYEYDVESDATTKMDELFDADSTNRRYKVIEV
Ga0208159_10001176	F084735	N/A	VKQLACQFRLLLGFFGLTPKDKLEIHQSIFYLIYGMPGFTFNDVYTMPIHLKNFYLREFMKFKKIEKEKMDNAKPKQQPTIPRRFSPK