Scaffold Ga0208159_1000023

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1000023
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53020
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027658	Metagenome / Metatranscriptome	194	Y
F032445	Metagenome / Metatranscriptome	180	Y
F043080	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_100002333	F032445	N/A	MCNTFFYYGDNMEFKPFNKHLWIKPQEEEQNKEDPLFIMPDEYQPPKSPYVIGEILDMSEDCTIDLLPGDTIVVERSTIQEIKGDFETIYVVKENYVYGRINDETDK
Ga0208159_100002334	F027658	AGGAG	MREEIEKVIEALQNALDDLDKVDNGSYGYKSAAPRARKVLMEASKQIKDVRTQVQEVKKSHEQN
Ga0208159_100002345	F043080	GGAGG	MNNSINTTVYTGTFKTQKGEDRTMNFIRPNEAPKGTFPTYFRERKLSEGMETVYDIDLQAYRTFNSKTQVGSISSTNKDVVVDLF