Scaffold Ga0208159_1000007

Overview

Basic Information

• Taxon OID: 3300025101
• Scaffold ID: Ga0208159_1000007
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 82184
• Total Scaffold Genes: 133
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (55.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F060451	Metagenome	133	Y
F097164	Metagenome	104	Y
F098268	Metagenome	104	N
F099144	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208159_1000007106	F099144	N/A	MAQVTFNRELGANPAGITRFAQYRTEDGGNVVVNSTIEDTSEGSEKRADKHGVTSSATGTGTVTLQAGSQNVGRVYIRSGINGEVLGEVHSPKISNRTDVSFTFSVGASIENFLYVEKTDRSPCVYRVTYTAA
Ga0208159_100000765	F098268	AGGTGG	VSKRRKGSDFFGWDNHAPKSTSFAFNKVKGSNTERSLNRPMPWHEKFRPEVNLKDFSILYDYNYASMWTRWRRGYELFMYTNQALVGLNYTFRYAMNGQAGSGGTEIPGLMYMYPSTEQDMGMRMVVIRPRDSINLLDLGLSIKSVFNFDLLNKVIGVELSSNFGPPVSDMTGELVSDRFQADGTPKTTYGNYTVVAVGTKAGGPQVPTGAADLDTLFLSVSEEKSFTTIEDKSFASPAFGNPQVGEFLSTAMRFGCNCPDYLNREDFNLYKYAQKKTYPYTGTQDLKPGTYDAGTNTFDGERPVDTRDFPGFVRDFGFLYTKNLFLGPATGGDGPGTSYSDPNLLFFQPKFCKHIYASWWDMQNRFENYKYLDAFLQQPTDEPMDGRYREYFEIQLGKQTRFLQTARSLNWWEAYSPARDTVPDHVLYSDMNPTMVKVLNFDTLASGVSVPLVPSGFVMFDIDEFNPLQPVPPENRPIIDGGQYFNGSPSGVSGTIIYDGGTYLNGAPLPPLFSPIINGGTY
Ga0208159_100000768	F008401	N/A	MASQNLLTIAQTAELLNCSAGFVRKRISLTESRQPGGWPKHTYVNLQPNGAKSLFRVDKDALQDFLKSEAQIESVETAEATVGEETPTCTTGTCSF
Ga0208159_100000770	F060451	AGCAG	MNSSEHISVGLTLEDEFTLTRIKNDAHELRGKERDQYLWNRIVRLICRERAYKYVVDELGVVVDPNIGVFEELED
Ga0208159_100000774	F097164	GAG	VVLASHDYISPPELIAETTAFLGGEIFLDPASSERANTIVQATRYFNWKDNGLKQDWKGKNIYLYPPRDIALKDEQPRSTRLFEKSTYFKKSNQRIWLESAYKKWMRQEFDEGIVFITSTEVALISTQKMNIDLPLCVLKEHPKLIKDTDNFETLSGSRVFGFVFYLPSVRFWEQRIHDFRQQYSDLGRVYV