Scaffold Ga0208669_1107457

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208669_1107457

Scaffold Ga0208669_1107457

Overview

Basic Information
Taxon OID	3300025099 Open in IMG/M
Scaffold ID	Ga0208669_1107457 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	576
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.63	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012625	Metagenome	279	Y
F022314	Metagenome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_11074571	F012625	N/A	RMDPLHNKTINVGDLVKEHTYSSKGRVGLVHEVISDYYLVVKWLDGSVDKRHRNKYEVTKIIDGNAHPNYLQDYIQGKRW
Ga0208669_11074572	F022314	AGG	MVKTREILKLGDIVRLVRHEPPEDPFHTFPTEEIDRMGVGLVVNVEALTGYKDVPQKEWIEYTVLWSGLGEQLKHLGFDLIKITGAEI

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