Scaffold Ga0208669_1043884

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1043884
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1041
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037939	Metagenome	167	Y
F078812	Metagenome	116	Y
F079228	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_10438842	F037939	AGGAG	MTTSNPDRDRERKEKLNVRKLKTLISEVDFYRDKFRGSMPTCVRNRLSRLEDVINVKTAIYEEALKND
Ga0208669_10438843	F079228	AGGAG	MQVNTDSVTILTKQVLKSEVEVLKLRPETMKNLTAILVLEDRIRELEGESL
Ga0208669_10438845	F078812	N/A	TRSMNSLELKNWFGRKSRMVEYNMVYPVNRWVGEDFIRMKYRDAVANCEVDYTDLTGVYEIMDELMNTGDVTFTTKEREV