Scaffold Ga0208669_1037991

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1037991
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1144
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007835	Metagenome / Metatranscriptome	344	Y
F024679	Metagenome / Metatranscriptome	205	Y
F059864	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_10379911	F059864	AGGA	MMYTKELIFNEFKDVTKKDQSKKKETYTHRIAYLSALKEDMIKVPRNFSNI
Ga0208669_10379912	F024679	AGG	MTTNSCNILKKGYDITLESGVKSLSACRYARKKLVKSTFFKGLTIKSIPDTIKTINTNKG
Ga0208669_10379914	F007835	AGGAG	MPFGTSTVRNTREQFVLQKIEYYKVMEYMGRSDWKRHYFDTYKEAVKFFKNKRLTKRKVLIFACRDNELGEVSTGLNDRFIDE