NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208669_1023312

Scaffold Ga0208669_1023312


Overview

Basic Information
Taxon OID3300025099 Open in IMG/M
Scaffold IDGa0208669_1023312 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1568
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010357Metagenome / Metatranscriptome305N
F015604Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0208669_10233122F010357AGGAGMYIDVKYSFRPNPQCSVEVVRYVETMYSFREVKSKCGQTDVDGGRVLCDACCELADNIERSRV
Ga0208669_10233123F015604AGGAGMNNKILQQKINRRKSLIANLPFDSEGVKFDQPSLTVEQGMARASRLALKGVQSNHLNLWQLRGGK

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