Scaffold Ga0208669_1016187

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1016187
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1978
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024137	Metagenome / Metatranscriptome	207	Y
F031926	Metagenome / Metatranscriptome	181	Y
F061906	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_10161871	F061906	AGGA	MQIHIVDTFEWGHLVPKVEKGVLATALKTAEENLTPNQPAEVIIFQTPEDDLE
Ga0208669_10161873	F024137	AGGA	MSNKLTTKLSTKVTMIVAELVCKVWKYGRSKYNGVSDFDYHITDLRSQYPNNLVYRDAVGVLPFYCKTNEVDDDFEKVSSIKLGDCNIRYQFNHEVKQVDKKDENIEHLFGDPRVPMIRDLITQTQIRHNEPKSLRVLNFKREGKNVVKLHNK
Ga0208669_10161874	F031926	GAGG	MSLSCTISNIQFDYAFNDAIKKASKSVGKDTTNFTNGIPNQTVLVFKTICCLPDEEINTRVIAEWYYKLFGVNISTTSTVRNMSRLSEYGLLDVVDNPHGKSWKYTWIKLTTAGRKLQKLFMGSASDWKDKPRLQLDRTVKTAMTGGIYD