Scaffold Ga0208669_1015723

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1015723
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2014
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004163	Metagenome	450	Y
F010947	Metagenome	297	Y
F012625	Metagenome	279	Y
F022314	Metagenome	215	Y
F040339	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_10157232	F004163	AGGAG	MKQTIEQLKRIVLDLKHYFEKSLPLILIGVALGYAFANHLETQRAEPVEIGFATVEDMSFLVQELKECKDNSGLLDGSY
Ga0208669_10157233	F022314	AGG	MVKTRDILKLGDMVRLVRHEPPEDPFHTFPTEEIDKMGVGLVVSIEELNSYIDVPEKKWVEYTILWSGRGEQLKHLGFDLIKITGEEI
Ga0208669_10157234	F012625	AGGAG	MDPLHNKTINVGDLVKEHTKRSKGRVGLVHEVISNYYLVVKWLDGSVDKRHRNKYEVTKIIDGEAYPNYLQDYIQGKRW
Ga0208669_10157235	F040339	AGGAG	MSIRDNLDRETYGDLMYRLGQMDAILQDLKGTISRFHEESRRIREAQPPEIVMALDEVLGRIPAAQEIEE
Ga0208669_10157236	F010947	N/A	DRQKSNTISRERKYQVSVQDEEKVMRKDIKKMINPALVEKWNKNKDGNLNGIVFNKGDLVSYTACEGESLGIVLAQHGIMASVQWTKQPEDFNLQGRIFVSSLKLISGVDK