Scaffold Ga0208669_1014983

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1014983
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2079
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029745	Metagenome	187	Y
F040056	Metagenome / Metatranscriptome	162	Y
F073529	Metagenome	120	Y
F077179	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_10149832	F040056	GGAG	MQTHADFRIGTLVRWHADDMTHGTDPADIDELGIVIDIPSQSLSGYYHIAWSTTNAISHHSPEMIEESLYQQQMEIIR
Ga0208669_10149833	F029745	GAGG	VARKAPQVGDVVKSRVTTESLAGYIVAKEGIHVWVRFFDTEFEAGDSWDVYTRRDTLEILSYANPR
Ga0208669_10149834	F077179	GGAGG	VKQDDYKPGDLILFFHGNSRFEEGPEEIGWIVRRDNEDPSEPAVMVGFPEPNKNGLLHYYDVELREWEKAGTIEVKRG
Ga0208669_10149835	F073529	GGAGG	VKVGDLVILRSGRYNFSPTAKGKWVWTEVLGVITDDRGFVDGTAEYKVYTADNKHTWSHIEDLRIVE