Basic Information | |
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Taxon OID | 3300025099 Open in IMG/M |
Scaffold ID | Ga0208669_1009773 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2718 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -16.21 | Long. (o) | -76.63 | Alt. (m) | Depth (m) | 30 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004165 | Metagenome | 450 | Y |
F005947 | Metagenome / Metatranscriptome | 385 | Y |
F017044 | Metagenome | 243 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208669_10097731 | F004165 | N/A | MNKLNSKQKSKIRRQVDLDLGVKPPKSIVFTSKKIYSRKLKHKKR |
Ga0208669_10097733 | F017044 | N/A | MQSIKHLKNDYIQLGNLIYKPYTVCSLPPTFGATDENGYSFITEWFNYKGYTYLFDKVVK |
Ga0208669_10097735 | F005947 | AGCAG | MNKRIFWSDEAHIHVHRNNGKVRDGYYFRSYDLNKFMALVEKEEGEVVGLEFEDNNVNIIIKENGTPTNESDI |
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