Scaffold Ga0208669

Basic Information
Taxon OID	3300025099 Open in IMG/M
Scaffold ID	Ga0208669_1009180 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025099 Open in IMG/M

Scaffold ID

Ga0208669_1009180 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2826
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

2826

Total Scaffold Genes

2 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.63	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-16.21

Long. (^o)

-76.63

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F037478	Metagenome	168	Y
F050303	Metagenome	145	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_10091801	F050303	N/A	TRRLSGVAKEVLGFEVGSMSLDALEAKVAELQADEYAAIDRDPDLSEEGKKAAKENLSSKNLIKQAKARLKGRGMLSNLSREEQEKLAVQEVTLTYALANTFKDQDRLTQRDVNAAKEIVNIFSLGRSSKDVRASIEAIGRQLESDIRRQESLYTVAGGLESTLKDLRRLKTLKCLRVEGGVASQLAGDLSLEEIENIIEGIN
Ga0208669_10091802	F037478	GGA	MASLKDIQDQINNNTFDPSKLNARQKKAVDEAIRRGLITGPSMSELETQRVGAAKDVATMDEAVKNPIGVRLQQTGSSLDGRSEAVLAGDLIGSIYPYVSDRKKIFSAAKSKIAGDKNTGLFPRKGNYFKTVGDKMARVLPGRFKLLGGTLRALGNVLDKTPIIGRLAQSQLVRTEVKSVIGGTVGAGAGSVGYDALNETAGVAIMDAIASDMENMSPKEVNTDIMANAADSMFTALAWNAGAATATPFITKGLGKLGRLMIGAKSKDAKELVNIARDKGLPLPMVMTAQEGTGLLGGFASKYFKVLGIMPFINGIGKEALQGAEQAAGRNYLNNDVLKYGPLIKTGMLSATIWKQADAAFKQNSNLINASYKAFDTLADTIGNPKVIPTGHVKFMAKNYVDELSMKYPGLKSYAQDALGDIDMKEIAKLQGTGDPLALFFRYMNGIDDFVTPKQYKGMMETLNRAISTTTYDNIRPTLWSIREALENDLNSFGSAITKETFLKDDAVKAAYETLKKTNPAAAEADMALRIKASEGLRDKLYGANDTFSTLMNFYQNANATKIFRDYSATTFTNKALAGIGSMQKKKSQKFFNDLANDVFTSGTPEGITQFRQLLGAQKIVSQKTGRAIGVTKGGGEALYNAAKARWMFNSFIKSFDSASSPAGRSMIDEITNEANVRAGINGTVDVMESMVQKGDVVDFSLDKVKAGTNIFDATKIRFSPKDTSMFNINKFMRNLGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208669_1009180

Overview

Ecosystem & Geography

Associated Families

Sequences